Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11745320_11753549_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11745320 - 11753549

Intron Length:

8230

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTCGC

5'SS Class:

strong_major

3'SS Sequence:

CTGTTTTGTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTAAT

U12 Branch Point Sequence:

TCCTCTGTCACT

Flanking Amino Acid:

RLPPTYMHAMWQAWDLAVDI

Intron Amino Acid Position:

270

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

0.9

68.8

42.2

Major BPS

76.6

0.66

1.1

75.9

36.3

Major PPT

75.2

0.57

0.9

69.2

41.8

Minor 5ss

34.7

-1.7

2.9

41.6

39.1

Minor BPS

48.1

-0

2.4

70.57

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011777

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012356

11676462 - 11784807

108346

ENSAPLT00000038032

11676462 - 11784807

108346

ENSAPLT00000034967

11676462 - 11784807

108346