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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11753695_11754632_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11753695 - 11754632
Intron Length:
938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGACTC
5'SS Class:
strong_major
3'SS Sequence:
AATCTCTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATCTCTTGACA
Flanking Amino Acid:
DTIAWNVLPRDLFQKLFRQD
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
69.9
41.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
70.3
0.46
1
65.3
40.3
Minor 5ss
35.1
-1.7
3.5
50.3
46.3
Minor BPS
67.5
0.54
1.2
70.88
34.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011777
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038032
11676462 - 11784807
108346
ENSAPLT00000034967
11676462 - 11784807
108346
ENSAPLT00000012356
11676462 - 11784807
108346