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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11754734_11765271_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11754734 - 11765271
Intron Length:
10538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCCAA
5'SS Class:
major
3'SS Sequence:
TCCTGCCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
ACCTGCTTATCC
Flanking Amino Acid:
VPGVTLDLIEKIPGRLNDRR
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
67.9
39.2
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
67.5
0.4
0.8
61.2
29.3
Minor 5ss
38.9
-1.2
3.1
47.7
42.3
Minor BPS
49.6
-0
2
60.02
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011777
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012356
11676462 - 11784807
108346
ENSAPLT00000038032
11676462 - 11784807
108346
ENSAPLT00000034967
11676462 - 11784807
108346