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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11784218_11784786_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11784218 - 11784786
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGGGTATC
5'SS Class:
major
3'SS Sequence:
TTTATGTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTACACTTAAAA
Flanking Amino Acid:
MSVVPRRARYKQSLDPT
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
72.2
39.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.1
0.52
1
67.1
43.7
Minor 5ss
33
-1.9
3.1
36.5
40.9
Minor BPS
62.7
0.39
1.6
72.86
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011777
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038032
11676462 - 11784807
108346
ENSAPLT00000034967
11676462 - 11784807
108346
ENSAPLT00000012356
11676462 - 11784807
108346