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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11828686_11829707_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11828686 - 11829707
Intron Length:
1022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AAGTCTGTAATC
Flanking Amino Acid:
PVKVPSSGPEREEKAEVDD*
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
83
0.74
0.8
77.3
31.4
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
51.4
0.02
2
61.32
38.7

Associated Gene:

Gene:
ENDOV
Ensembl Gene ID:
ENSAPLG00000003471
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003543
11828658 - 11840283
11626