About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11829519_11829707_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11829519 - 11829707
Intron Length:
189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAC
U12 Branch Point Sequence:
TGCTACTTCACA
Flanking Amino Acid:
PVKVPSSGPERAPCPRLGKV
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
67.8
0.44
1
75
30.1
Major PPT
89.6
0.89
0.7
85
29.8
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
56.4
0.19
2
69.03
43.1

Associated Gene:

Gene:
ENDOV
Ensembl Gene ID:
ENSAPLG00000003471
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027954
11829219 - 11840283
11065