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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11836393_11836495_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11836393 - 11836495
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTCACCAACT
Flanking Amino Acid:
LARDELHREQIRSLQREGDT
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
85
0.87
0.8
85.6
23
Major PPT
73.4
0.53
0.9
66.1
40.8
Minor 5ss
28.9
-2.4
3.3
37.9
46.9
Minor BPS
50.7
0.1
2.1
78.59
43

Associated Gene:

Gene:
ENDOV
Ensembl Gene ID:
ENSAPLG00000003471
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027954
11829219 - 11840283
11065
ENSAPLT00000003543
11828658 - 11840283
11626