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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11839522_11839897_R

Intron Information:

Intron Rank:
53
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11839522 - 11839897
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGGGT
5'SS Class:
major
3'SS Sequence:
CTCTGCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TACGTCCTAATA
Flanking Amino Acid:
KNVDEFRPLWSLKESLIPLL
Intron Amino Acid Position:
4170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
69.7
40.9
Major BPS
80
0.75
1
78.6
31
Major PPT
81.3
0.7
0.8
72.4
37.8
Minor 5ss
31
-2.2
3.6
47.4
48
Minor BPS
49.7
-0
1.8
60.32
40.2

Associated Gene:

Gene:
RNF213
Ensembl Gene ID:
ENSAPLG00000002904
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002987
11839368 - 11879989
40622
ENSAPLT00000037030
11838929 - 11879989
41061
ENSAPLT00000030458
11838929 - 11879989
41061
ENSAPLT00000042754
11838929 - 11879989
41061
Gene:
ENDOV
Ensembl Gene ID:
ENSAPLG00000003471
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027954
11829219 - 11840283
11065
ENSAPLT00000003543
11828658 - 11840283
11626