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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11840077_11840193_R

Intron Information:

Intron Rank:
52
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11840077 - 11840193
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
TTGCATTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTTCTCATT
Flanking Amino Acid:
KSEQLLRIKRDPFVDINAQY
Intron Amino Acid Position:
4111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
72.1
34.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
78
0.63
0.9
72.7
37.3
Minor 5ss
37.8
-1.4
3
42.5
44.6
Minor BPS
51.7
0.13
2
79.49
37.4

Associated Gene:

Gene:
RNF213
Ensembl Gene ID:
ENSAPLG00000002904
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030458
11838929 - 11879989
41061
ENSAPLT00000042754
11838929 - 11879989
41061
ENSAPLT00000002987
11839368 - 11879989
40622
ENSAPLT00000037030
11838929 - 11879989
41061
Gene:
ENDOV
Ensembl Gene ID:
ENSAPLG00000003471
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027954
11829219 - 11840283
11065
ENSAPLT00000003543
11828658 - 11840283
11626