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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11842247_11842367_R

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11842247 - 11842367
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
GTCACTCTAAAT
Flanking Amino Acid:
LVNKHTKEDDRYLISPSEVA
Intron Amino Acid Position:
3921

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.9
36.3
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
73.4
0.53
1
74.8
27.7
Minor 5ss
46.6
-0.3
2.5
61.6
43.3
Minor BPS
49.2
0.02
1.8
67.61
42.7

Associated Gene:

Gene:
RNF213
Ensembl Gene ID:
ENSAPLG00000002904
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037030
11838929 - 11879989
41061
ENSAPLT00000030458
11838929 - 11879989
41061
ENSAPLT00000002987
11839368 - 11879989
40622
ENSAPLT00000042754
11838929 - 11879989
41061