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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11843815_11844240_R

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11843815 - 11844240
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTACTCATAAAT
Flanking Amino Acid:
VPLLWKFLQKETELRLVKTL
Intron Amino Acid Position:
3789

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
88.8
0.87
0.7
81
31
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
56.7
0.29
1.7
76.83
38.7

Associated Gene:

Gene:
RNF213
Ensembl Gene ID:
ENSAPLG00000002904
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002987
11839368 - 11879989
40622
ENSAPLT00000042754
11838929 - 11879989
41061
ENSAPLT00000037030
11838929 - 11879989
41061
ENSAPLT00000030458
11838929 - 11879989
41061