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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11845998_11846320_R

Intron Information:

Intron Rank:
42
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11845998 - 11846320
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTTCC
5'SS Class:
weak_major
3'SS Sequence:
TGTTGCTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TATTGATTACAC
Flanking Amino Acid:
MLLGATKDPQSLQKIIKPPV
Intron Amino Acid Position:
3613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.2
68.5
37.5
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
81.2
0.7
0.9
77.8
36.7
Minor 5ss
60.9
0.37
1.9
71.4
38.7
Minor BPS
45.2
-0.3
2.3
62.11
42.7

Associated Gene:

Gene:
RNF213
Ensembl Gene ID:
ENSAPLG00000002904
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042754
11838929 - 11879989
41061
ENSAPLT00000037030
11838929 - 11879989
41061
ENSAPLT00000030458
11838929 - 11879989
41061
ENSAPLT00000002987
11839368 - 11879989
40622