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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11852611_11853325_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11852611 - 11853325
Intron Length:
715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGCAG
U12 Branch Point Sequence:
GTTGTGGTAAGG
Flanking Amino Acid:
SVMLKLLLKYSFSEVKNDVQ
Intron Amino Acid Position:
3153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
46.9
-0.1
1.7
63.1
44.4
Major PPT
81.9
0.72
0.7
77.8
24.2
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
37
-1.1
2.7
46.56
46.6

Associated Gene:

Gene:
RNF213
Ensembl Gene ID:
ENSAPLG00000002904
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042754
11838929 - 11879989
41061
ENSAPLT00000037030
11838929 - 11879989
41061
ENSAPLT00000030458
11838929 - 11879989
41061
ENSAPLT00000002987
11839368 - 11879989
40622