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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11855099_11855914_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11855099 - 11855914
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ACTTTTTGAAAT
Flanking Amino Acid:
SQCHQLLKELKVCWNRVFSM
Intron Amino Acid Position:
2930

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
77.4
0.62
0.7
71.8
26.5
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
57
0.3
1.5
71.88
39.1

Associated Gene:

Gene:
RNF213
Ensembl Gene ID:
ENSAPLG00000002904
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030458
11838929 - 11879989
41061
ENSAPLT00000002987
11839368 - 11879989
40622
ENSAPLT00000042754
11838929 - 11879989
41061
ENSAPLT00000037030
11838929 - 11879989
41061