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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11857218_11857663_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11857218 - 11857663
Intron Length:
446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTTCTCTGTATT
Flanking Amino Acid:
LETQYIQNIEDQAEKFVDIF
Intron Amino Acid Position:
2747

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
84.4
0.77
0.8
76.2
37.8
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
54.5
0.22
1.8
77.85
38.2

Associated Gene:

Gene:
RNF213
Ensembl Gene ID:
ENSAPLG00000002904
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030458
11838929 - 11879989
41061
ENSAPLT00000002987
11839368 - 11879989
40622
ENSAPLT00000042754
11838929 - 11879989
41061
ENSAPLT00000037030
11838929 - 11879989
41061