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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11860047_11860933_R

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11860047 - 11860933
Intron Length:
887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCTGGGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ACTTTTTTCACA
Flanking Amino Acid:
DSVPETERLEDGVLDTTVLL
Intron Amino Acid Position:
2606

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1.2
81.4
33.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
56.1
0.14
1.2
59.6
40.8
Minor 5ss
38.3
-1.3
2.8
51.3
45.1
Minor BPS
58.7
0.27
1.7
68.42
38.7

Associated Gene:

Gene:
RNF213
Ensembl Gene ID:
ENSAPLG00000002904
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037030
11838929 - 11879989
41061
ENSAPLT00000030458
11838929 - 11879989
41061
ENSAPLT00000002987
11839368 - 11879989
40622
ENSAPLT00000042754
11838929 - 11879989
41061