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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11863115_11863443_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11863115 - 11863443
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCACTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTTATTTTAACT
Flanking Amino Acid:
DTEYSFLKGIRDFLEATSGN
Intron Amino Acid Position:
2471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
69.2
43.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
83.3
0.75
0.7
81.5
30
Minor 5ss
34
-1.8
2.9
42.1
44.4
Minor BPS
73.2
0.81
1.2
83.78
37.4

Associated Gene:

Gene:
RNF213
Ensembl Gene ID:
ENSAPLG00000002904
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030458
11838929 - 11879989
41061
ENSAPLT00000002987
11839368 - 11879989
40622
ENSAPLT00000042754
11838929 - 11879989
41061
ENSAPLT00000037030
11838929 - 11879989
41061