About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11872799_11873035_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11872799 - 11873035
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TACTCTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
GATGGCTTACTC
Flanking Amino Acid:
VLRAPSDGQKVSLDNVLHLI
Intron Amino Acid Position:
679

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
76.9
33.7
Major BPS
71.2
0.53
1
61
37.5
Major PPT
72.9
0.52
1
69.3
36.5
Minor 5ss
30.1
-2.3
3.1
38.6
46.4
Minor BPS
46.1
-0.3
2.1
55.71
43

Associated Gene:

Gene:
RNF213
Ensembl Gene ID:
ENSAPLG00000002904
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042754
11838929 - 11879989
41061
ENSAPLT00000037030
11838929 - 11879989
41061
ENSAPLT00000030458
11838929 - 11879989
41061
ENSAPLT00000002987
11839368 - 11879989
40622