About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11873177_11873718_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11873177 - 11873718
Intron Length:
542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATAAG
U12 Branch Point Sequence:
TCTCTCTCCACA
Flanking Amino Acid:
ETDENLPKKLRASAQHLEWL
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
46
-0.2
1.6
49.8
42.2
Major PPT
81.2
0.7
0.7
75.9
26.2
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
48.9
-0
2
64.43
42.1

Associated Gene:

Gene:
RNF213
Ensembl Gene ID:
ENSAPLG00000002904
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037030
11838929 - 11879989
41061
ENSAPLT00000030458
11838929 - 11879989
41061
ENSAPLT00000002987
11839368 - 11879989
40622
ENSAPLT00000042754
11838929 - 11879989
41061