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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11874738_11875032_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11874738 - 11875032
Intron Length:
295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
GCTTGCTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GTTTCCAGACTG
Flanking Amino Acid:
FSVLTNLLHITEKFELYKTQ
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
80.8
31.6
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
75.5
0.57
0.9
69.3
36.9
Minor 5ss
42.1
-0.9
2.8
56.5
35.6
Minor BPS
46.6
-0.3
2
58.17
43.4

Associated Gene:

Gene:
RNF213
Ensembl Gene ID:
ENSAPLG00000002904
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037030
11838929 - 11879989
41061
ENSAPLT00000030458
11838929 - 11879989
41061
ENSAPLT00000002987
11839368 - 11879989
40622
ENSAPLT00000042754
11838929 - 11879989
41061