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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11878646_11879281_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11878646 - 11879281
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTCAT
5'SS Class:
major
3'SS Sequence:
TTCTCACCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGCTTCTCACCT
Flanking Amino Acid:
VTFSICKEPEAWNEFVNISF
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.2
71.7
39.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
80.5
0.69
0.8
74.3
29.6
Minor 5ss
38.3
-1.3
2.8
50.3
46
Minor BPS
53.3
0.18
1.9
72.31
44.6

Associated Gene:

Gene:
RNF213
Ensembl Gene ID:
ENSAPLG00000002904
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037030
11838929 - 11879989
41061
ENSAPLT00000030458
11838929 - 11879989
41061
ENSAPLT00000002987
11839368 - 11879989
40622
ENSAPLT00000042754
11838929 - 11879989
41061