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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11906166_11906248_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11906166 - 11906248
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGCGCCCG
5'SS Class:
major
3'SS Sequence:
CCCTCCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAG
U12 Branch Point Sequence:
CCCGGCTGAGCC
Flanking Amino Acid:
LETESRLRFTLRDPARQRYE
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.8
0.3
1.1
44.7
44.7
Major BPS
43.9
-0.3
1.6
36.8
44.4
Major PPT
75.8
0.58
0.7
69
24.8
Minor 5ss
32.2
-2
3.2
40.1
45.5
Minor BPS
39.5
-0.8
2
42.11
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017387
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030975
11906016 - 11906883
868