About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11908053_11908481_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11908053 - 11908481
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCCATTTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
CTTCCATTTACT
Flanking Amino Acid:
LRKKITETQKNAQDCNKIVL
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74
38.4
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
72.1
0.5
0.9
66.4
39.1
Minor 5ss
33.3
-1.9
2.8
38.7
46.6
Minor BPS
57.8
0.33
2
79.26
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002081
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002164
11906986 - 11919714
12729