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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11910177_11910517_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11910177 - 11910517
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGAGG
5'SS Class:
major
3'SS Sequence:
TTCCCAAATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GCTTCCCAAATC
Flanking Amino Acid:
TENEFIRSLKAAEKESIEMQ
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
57.8
46.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
64.7
0.33
0.9
56.3
38
Minor 5ss
29.9
-2.3
3.3
39.8
45.8
Minor BPS
49.8
-0
2
63.53
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002081
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002164
11906986 - 11919714
12729