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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11911454_11912221_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11911454 - 11912221
Intron Length:
768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGCCCTCATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTGCCCTCATCT
Flanking Amino Acid:
KLEVLLSQQGGQELGPLEIE
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
77.1
37.8
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
66.8
0.38
0.9
58.7
37.4
Minor 5ss
44
-0.6
2.5
52.7
44
Minor BPS
57.8
0.32
1.9
78.02
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002081
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002164
11906986 - 11919714
12729