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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11912468_11913375_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11912468 - 11913375
Intron Length:
908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGGTAT
5'SS Class:
major
3'SS Sequence:
TGTCTATTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGGTAT
U12 Branch Point Sequence:
TGTCTATTATTA
Flanking Amino Acid:
ARLHQRKIDLELHFSKVEND
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
70.1
36.3
Major BPS
56.4
0.16
1.6
57.4
49.1
Major PPT
71.9
0.49
0.9
71.4
38.5
Minor 5ss
44.6
-0.6
3.2
60.4
46.7
Minor BPS
48.5
-0.1
1.8
62.48
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002081
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002164
11906986 - 11919714
12729