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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11913559_11913667_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
11913559 - 11913667
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAAGA
5'SS Class:
major
3'SS Sequence:
CCCTACCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTGAT
U12 Branch Point Sequence:
TCTTCCCTACCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
69.5
36.5
Major BPS
73.5
0.58
1.2
63.4
44.3
Major PPT
72.6
0.51
0.8
69.3
31
Minor 5ss
27.5
-2.6
2.7
28.4
38
Minor BPS
63.3
0.5
2
84.58
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002081
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002164
11906986 - 11919714
12729