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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11914803_11915197_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
11914803 - 11915197
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TGTTTACAAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.5
40.6
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
75.6
0.58
0.7
69
31.5
Minor 5ss
33.8
-1.8
3.3
49
46.8
Minor BPS
45.9
-0.2
2.1
70.15
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002081
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002164
11906986 - 11919714
12729