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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11915321_11916195_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
11915321 - 11916195
Intron Length:
875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCAATT
5'SS Class:
weak_major
3'SS Sequence:
TCTAACTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TACTCCAGAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
77.2
37.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
73.6
0.53
0.8
70.4
35.8
Minor 5ss
53.7
0.13
2.6
75.3
40.4
Minor BPS
61.5
0.44
1.8
79.55
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002081
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002164
11906986 - 11919714
12729