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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11917400_11917487_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
11917400 - 11917487
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATATAGC
5'SS Class:
major
3'SS Sequence:
CTTGTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTGAA
U12 Branch Point Sequence:
AGTGAGATAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1
63.9
40.3
Major BPS
63.2
0.33
1.1
55.1
42.1
Major PPT
82.4
0.73
0.9
76.3
37.7
Minor 5ss
41.7
-0.9
2.7
51.2
40.6
Minor BPS
41.7
-0.6
2.4
55.63
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002081
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002164
11906986 - 11919714
12729