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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11927980_11940648_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11927980 - 11940648
Intron Length:
12669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCGTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCCAC
U12 Branch Point Sequence:
TTCTCCTCCACG
Flanking Amino Acid:
SSSVFLDNESRDTCDNRTTC
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
47
-0.1
1.3
55.7
39.5
Major PPT
78.7
0.65
0.8
72.5
32.2
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
56.3
0.05
2.1
67.41
46.1

Associated Gene:

Gene:
TBC1D16
Ensembl Gene ID:
ENSAPLG00000014159
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014781
11921081 - 11949951
28871
ENSAPLT00000008336
11921081 - 11949951
28871