Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11965835_11966387_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11965835 - 11966387

Intron Length:

553

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

CTTTGCGTTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTGAC

U12 Branch Point Sequence:

CCTGGCTGACCA

Flanking Amino Acid:

GPKPKPLVMQLPSFARRSNI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.7

80.2

27.1

Major BPS

49.4

-0

1.3

42.8

41.8

Major PPT

79.3

0.66

0.9

72.8

37.5

Minor 5ss

27.5

-2.6

32.5

42.3

Minor BPS

42.2

-0.5

2.1

51.11

46.7

Associated Gene:

Gene:

CBX4

Ensembl Gene ID:

ENSAPLG00000023770

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046401

11965424 - 11971344

5921