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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11978096_11978518_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11978096 - 11978518
Intron Length:
423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TTCACCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TAATGCTGAACT
Flanking Amino Acid:
GSLEVLKPLLRSSAPLLAAT
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.3
60.2
39.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.6
0.58
0.9
69
36.9
Minor 5ss
29.4
-2.4
3
31.4
35.2
Minor BPS
61.5
0.44
1.9
79.45
41.9

Associated Gene:

Gene:
ENPP7
Ensembl Gene ID:
ENSAPLG00000021105
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029970
11976730 - 11981891
5162