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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11978733_11978865_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11978733 - 11978865
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
GCCTCCCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
GGGCGCTCACCC
Flanking Amino Acid:
YSDPGYVIHGRFKVQFNKGE
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.9
40
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
77
0.61
0.8
72.9
32
Minor 5ss
37.8
-1.4
3
42.6
44.5
Minor BPS
40.3
-0.7
2.1
45.69
42.5

Associated Gene:

Gene:
ENPP7
Ensembl Gene ID:
ENSAPLG00000021105
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029970
11976730 - 11981891
5162