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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11985066_11996849_F

Intron Information:

Intron Rank:
136460
Intron Class:
major
Intron Phase:
Intron Coordinates:
11985066 - 11996849
Intron Length:
11784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGGGG
5'SS Class:
major
3'SS Sequence:
CCGTTTTGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
60.4
44.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.3
0.59
1
72
38
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023526
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024757
11984627 - 11997857
13231