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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12136323_12137057_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12136323 - 12137057
Intron Length:
735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGGAG
5'SS Class:
major
3'SS Sequence:
GGTGCTCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
TGGGGCTGACGA
Flanking Amino Acid:
QSIAGTQTVPQTDEAAQTDS
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
64.3
41.8
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
70.6
0.46
1
62.4
39.7
Minor 5ss
29
-2.4
3.5
38.1
46.8
Minor BPS
36.9
-0.9
2.2
44.13
44.4

Associated Gene:

Gene:
RBFOX3
Ensembl Gene ID:
ENSAPLG00000029113
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040401
12121528 - 12143098
21571
ENSAPLT00000033711
12113292 - 12142549
29258
ENSAPLT00000033600
12046401 - 12143613
97213
ENSAPLT00000023129
12113292 - 12143750
30459