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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12137196_12137662_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12137196 - 12137662
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
AGGCACTCACCC
Flanking Amino Acid:
RDPDLRQMFGQFGKILDVEI
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.8
43.8
Major BPS
64.9
0.37
1
67
29.8
Major PPT
82.6
0.73
0.8
76.5
32.1
Minor 5ss
31.9
-2.1
2.9
33
41.8
Minor BPS
42.6
-0.5
1.9
48.72
40.5

Associated Gene:

Gene:
RBFOX3
Ensembl Gene ID:
ENSAPLG00000029113
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033711
12113292 - 12142549
29258
ENSAPLT00000033600
12046401 - 12143613
97213
ENSAPLT00000023129
12113292 - 12143750
30459
ENSAPLT00000040401
12121528 - 12143098
21571