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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12137717_12138356_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12137717 - 12138356
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCCT
U12 Branch Point Sequence:
CTCTGCTCACAG
Flanking Amino Acid:
EIIFNERGSKGFGFVTFETS
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
74.9
35.3
Major BPS
37.5
-0.7
4.3
79.6
35.6
Major PPT
74.3
0.55
0.8
67.4
32.5
Minor 5ss
28.5
-2.5
3.4
40.8
45.6
Minor BPS
40
-0.9
2.2
44.15
47.5

Associated Gene:

Gene:
RBFOX3
Ensembl Gene ID:
ENSAPLG00000029113
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033711
12113292 - 12142549
29258
ENSAPLT00000033600
12046401 - 12143613
97213
ENSAPLT00000023129
12113292 - 12143750
30459
ENSAPLT00000040401
12121528 - 12143098
21571