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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12140413_12141080_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12140413 - 12141080
Intron Length:
668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGC|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
CGCTTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAG
U12 Branch Point Sequence:
TGGCACTGAGCC
Flanking Amino Acid:
PPPPPIPTYGAVVYQDGFYG
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1.3
65.8
40.2
Major BPS
48.9
-0
1.5
46.7
38.9
Major PPT
76.2
0.59
0.8
69.4
31.3
Minor 5ss
32.5
-2
2.6
33.8
33.9
Minor BPS
45.4
-0.3
1.8
55.22
42

Associated Gene:

Gene:
RBFOX3
Ensembl Gene ID:
ENSAPLG00000029113
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040401
12121528 - 12143098
21571
ENSAPLT00000033711
12113292 - 12142549
29258
ENSAPLT00000033600
12046401 - 12143613
97213
ENSAPLT00000023129
12113292 - 12143750
30459