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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12146123_12146226_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12146123 - 12146226
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
CTGCCCCTGATG
Flanking Amino Acid:
RFTCLLGEVRVLDAASVAAS
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
77.7
0.69
1
81
30.2
Major PPT
81.5
0.71
0.7
76.1
25.9
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
48
-0.3
1.8
52.5
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020957
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045036
12145727 - 12147842
2116