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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12148314_12148429_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12148314 - 12148429
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCAGGAC
U12 Branch Point Sequence:
GCCAGCAGGACG
Flanking Amino Acid:
NGLSASLCRQMTYSLTRFAI
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
38
-0.7
1.3
25.1
33.6
Major PPT
86.1
0.81
0.7
81.1
24
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
35.9
-1.2
2
33.67
40

Associated Gene:

Gene:
SLC25A10
Ensembl Gene ID:
ENSAPLG00000014178
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041902
12143392 - 12151789
8398
ENSAPLT00000020127
12143392 - 12151349
7958
ENSAPLT00000014791
12143449 - 12151349
7901