About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12149960_12150234_F


Intron Information:

Intron Rank:
6

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
12149960 - 12150234

Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GCT|GTGAGCAGG

5'SS Class:
major

3'SS Sequence:
CACCTCTCCGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TGGTGAC

U12 Branch Point Sequence:
TGACCCCCCACC

Flanking Amino Acid:
FTHFLASFIAGGCATFLCQP

Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
62.5
0.3
1.1
53
45.5

Major BPS
56.2
0.15
1.3
48.8
46.3

Major PPT
71.1
0.47
0.8
64.9
30.2

Minor 5ss
36.2
-1.6
3
49.6
46.4

Minor BPS
42.7
-0.5
2.2
55.2
42

Associated Gene:

Gene:
SLC25A10

Ensembl Gene ID:

Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

12143392 - 12151349
7958

12143449 - 12151349
7901