Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12154178_12159510_F

Intron Information:

Intron Rank:

137429

Intron Class:

major

Intron Phase:

Intron Coordinates:

12154178 - 12159510

Intron Length:

5333

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGGGGG

5'SS Class:

major

3'SS Sequence:

TCCTCTCCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCCCAT

U12 Branch Point Sequence:

GTCCCCATGACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

1.1

58.9

Major BPS

59.7

0.24

1.3

68.6

38.9

Major PPT

83.2

0.75

0.7

80.8

24.5

Minor 5ss

27.5

-2.6

3.6

37.8

Minor BPS

55.7

0.16

1.7

65.56

39.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023991

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047587

12152947 - 12162716

9770