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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12159668_12159867_F

Intron Information:

Intron Rank:
137430
Intron Class:
major
Intron Phase:
Intron Coordinates:
12159668 - 12159867
Intron Length:
200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
GTGCTGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAC
U12 Branch Point Sequence:
GCCCCGGTGACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
47.5
-0.1
1.3
38.2
41.7
Major PPT
67.3
0.39
1
57.7
43.2
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
39.8
-0.8
2.5
47.46
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023991
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047587
12152947 - 12162716
9770