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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12160200_12160369_F

Intron Information:

Intron Rank:
137432
Intron Class:
major
Intron Phase:
Intron Coordinates:
12160200 - 12160369
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTGCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCGCAG
U12 Branch Point Sequence:
CCTCTCTGCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
38.6
-0.7
1.6
42.6
40.4
Major PPT
72.4
0.5
0.9
67.2
32.6
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
46.7
-0.2
1.9
56.77
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023991
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047587
12152947 - 12162716
9770