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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12161142_12161241_F

Intron Information:

Intron Rank:
137436
Intron Class:
major
Intron Phase:
Intron Coordinates:
12161142 - 12161241
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
CGTGCCTCACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.1
34.7
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
70.7
0.47
0.7
61.5
29
Minor 5ss
27.1
-2.6
2.9
24.2
36.8
Minor BPS
49.3
0.03
2
68.65
47.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023991
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047587
12152947 - 12162716
9770