About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12162179_12162295_F

Intron Information:

Intron Rank:
137440
Intron Class:
major
Intron Phase:
Intron Coordinates:
12162179 - 12162295
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
TGCCTCCGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CCTCTCACACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
67.6
39.4
Major BPS
72.7
0.56
1
75
30.1
Major PPT
65.9
0.36
0.9
57.5
38.6
Minor 5ss
32.7
-2
3
39.6
45.9
Minor BPS
41.9
-0.5
2
57.84
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023991
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047587
12152947 - 12162716
9770