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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12162338_12162419_F

Intron Information:

Intron Rank:
137441
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
12162338 - 12162419
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CGGCCGCCCCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGCTGAT
U12 Branch Point Sequence:
GGGCACAGGACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
58.4
0.21
1.4
51.1
46.3
Major PPT
57.6
0.17
0.9
46.3
36.6
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
39.7
-0.8
1.8
44.19
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023991
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047587
12152947 - 12162716
9770