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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12179050_12179269_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12179050 - 12179269
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTACGTATT
5'SS Class:
major
3'SS Sequence:
TGTTAATTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTTTGTTAATT
Flanking Amino Acid:
DENKNVFVEFYAPWCGHCKQ
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
75.3
40.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
72.4
0.5
1
66.7
42.8
Minor 5ss
43.5
-0.7
3.2
69.6
40.8
Minor BPS
65.1
0.55
2
83.97
37.3

Associated Gene:

Gene:
P4HB
Ensembl Gene ID:
ENSAPLG00000014245
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014865
12176613 - 12190875
14263