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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12179391_12180026_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12179391 - 12180026
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAATG
5'SS Class:
major
3'SS Sequence:
CTTTCTATTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TGTGTCTGAATT
Flanking Amino Acid:
CNKFLEGKIKPHLMSQDLPE
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
75.5
40.6
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
85.6
0.8
0.8
77.6
35.4
Minor 5ss
42.6
-0.8
3
57.6
46.6
Minor BPS
61.9
0.45
1.5
77.06
39.7

Associated Gene:

Gene:
P4HB
Ensembl Gene ID:
ENSAPLG00000014245
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014865
12176613 - 12190875
14263